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HPC School 2012

A funded eight-day graduate course for South African students who wish to advance their expertise in high performance computing (HPC), parallel programming and related research topics which would potentially rely on HPC techniques. 1 to 8 July 2012

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DL_poly

DL_poly_3.07 and DL_poly_3.09 (Blue Gene/P)
#@ job_type = bluegene
#@ bg_size = 64
#@ class = BGP
#@ input = /dev/null
#@ output = dlpoly.$(jobid).out
#@ error = dlpoly.$(jobid).err
#@ wall_clock_limit = 12:00:00
#@ resources = ConsumableCpus(1)
#@ node_usage = shared
#@ cluster_list = BGP
#@ notification = complete
#@ queue
/bgsys/drivers/ppcfloor/bin/mpirun -np 32 -mode VN -cwd /CHPC/work/username/test -exe /CHPC/usr/local/BGP/dlpoly/DLPOLY-3.07.Y OR /CHPC/usr/local/BGP/dlpoly/DLPOLY-3.09.Y
DL_poly_3.09 (Sun Microsystems)
###These lines are for Moab
#MSUB -l nodes=5:ppn=8
#MSUB -l partition=nehalem|harpertown
#MSUB -l walltime=168:00:00
#MSUB -m be
#MSUB -V
#MSUB -o /lustre/SCRATCH2/users/username/work/stdout.out
#MSUB -e /lustre/SCRATCH2/users/username/work/stderr.err
#MSUB -d /lustre/SCRATCH2/users/username/work
#MSUB -mb
#MSUB -M username@mail.co.za
##### Running commands
exe=/opt/gridware/dlpoly/DLPOLY_3.09.Y
nproc=`cat $PBS_NODEFILE | wc -l`
mpirun -np $nproc $exe